Structure of PDB 8j6z Chain z
Receptor sequence
>8j6zz (length=227) Species:
3702
(Arabidopsis thaliana) [
Search protein sequence
]
RRTVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSAD
PETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQI
FSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDP
LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKG
PIENLFDHLADPVANNAWSYATNFVPG
3D structure
PDB
8j6z
Cryo-EM structure of the Arabidopsis thaliana photosystem I(PSI-LHCII-ST2)
Chain
z
Resolution
2.79 Å
3D
structure
[
Spin on
]
[
Spin off
]
[
Reset orientation
]
[
High quality
]
[
Low quality
]
[
White background
]
[
Black background
]
[
Download
]
[
Download structure with residue number starting from 1
]
Enzymatic activity
Enzyme Commision number
?
Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
CHL
z
W218 V225
W218 V225
BS02
CLA
z
G38 D39 Y40 W42 D43 S48 N57 R58 E61 R181 M184 F185
G38 D39 Y40 W42 D43 S48 N57 R58 E61 R181 M184 F185
BS03
CLA
z
H208 P212 N216
H208 P212 N216
BS04
CLA
z
K175 N179 L182
K175 N179 L182
BS05
CLA
z
F185 F188 G189 V192 Q193 N204 H208 A217 Y220
F185 F188 G189 V192 Q193 N204 H208 A217 Y220
BS06
CLA
z
G74 F77 L106 Y108
G74 F77 L106 Y108
BS07
CHL
z
I123 V126 Q127
I123 V126 Q127
BS08
CHL
z
E59 L60 I63 H64 W67 M131 E135 R138
E59 L60 I63 H64 W67 M131 E135 R138
BS09
CHL
z
R66 W67 I134 Y137 R138 G142 P143 L144 F157
R66 W67 I134 Y137 R138 G142 P143 L144 F157
BS10
CHL
z
Y20 L21 G22 F24 W42
Y20 L21 G22 F24 W42
BS11
CLA
z
W12 K175 K178
W12 K175 K178
BS12
CLA
z
Y152 P153 G154 F157 L162 F169 L172 E176
Y152 P153 G154 F157 L162 F169 L172 E176
BS13
CHL
z
N113 L114 H116 A117 Q118 S119
N113 L114 H116 A117 Q118 S119
BS14
CHL
z
F94 G97 F101 Q127
F94 G97 F101 Q127
Gene Ontology
Molecular Function
GO:0016168
chlorophyll binding
GO:0019904
protein domain specific binding
GO:0046872
metal ion binding
Biological Process
GO:0009269
response to desiccation
GO:0009409
response to cold
GO:0009416
response to light stimulus
GO:0009644
response to high light intensity
GO:0009645
response to low light intensity stimulus
GO:0009765
photosynthesis, light harvesting
GO:0009768
photosynthesis, light harvesting in photosystem I
GO:0009769
photosynthesis, light harvesting in photosystem II
GO:0010114
response to red light
GO:0010218
response to far red light
GO:0015979
photosynthesis
GO:0042631
cellular response to water deprivation
GO:0071215
cellular response to abscisic acid stimulus
GO:0090333
regulation of stomatal closure
GO:1903428
positive regulation of reactive oxygen species biosynthetic process
Cellular Component
GO:0005739
mitochondrion
GO:0005794
Golgi apparatus
GO:0009507
chloroplast
GO:0009517
PSII associated light-harvesting complex II
GO:0009522
photosystem I
GO:0009523
photosystem II
GO:0009535
chloroplast thylakoid membrane
GO:0009579
thylakoid
GO:0009941
chloroplast envelope
GO:0016020
membrane
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:8j6z
,
PDBe:8j6z
,
PDBj:8j6z
PDBsum
8j6z
PubMed
37936349
UniProt
Q9SHR7
|CB21_ARATH Chlorophyll a-b binding protein 2.1, chloroplastic (Gene Name=LHCB2.1)
[
Back to BioLiP
]