Structure of PDB 6zvj Chain z

Receptor sequence

>6zvjz (length=122) Species: 9606 (Homo sapiens)

VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDV
IFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSR
KQRKERKNRMKKVRGTAKANVG

3D structure

• PDB: 6zvj A structural inventory of native ribosomal ABCE1-43S pre-initiation complexes.
• Chain: z
• Resolution: 3.8 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	z	K11 F12 K32 A33 T34 P36 K37 G59 F60 R61 T62 H63 F64 G66 H89 S103 R104 K105 R107 K108 E109 K111 N112 K115 K116 R118 G119 T120 K122	K7 F8 K28 A29 T30 P32 K33 G55 F56 R57 T58 H59 F60 G62 H85 S99 R100 K101 R103 K104 E105 K107 N108 K111 K112 R114 G115 T116 K118

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005783 endoplasmic reticulum
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0044391 ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6zvj, PDBe:6zvj, PDBj:6zvj
• PDBsum: 6zvj
• PubMed: 33289941
• UniProt: E7ETK0