Structure of PDB 5mgp Chain z

Receptor sequence
>5mgpz (length=359) Species: 562 (Escherichia coli) [Search protein sequence]
PVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQA
LGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDA
LEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRW
AESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKS
PFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGAQHVN
RTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNA
EKQAMEDNKSDIGWGSQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQ
FIEASLKAG
3D structure
PDB5mgp Structural basis for ArfA-RF2-mediated translation termination on mRNAs lacking stop codons.
Chainz
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna z W47 R245 S247 A249 G250 A251 Q252 H253 N255 R256 E258 R262 R278 Q280 W42 R240 S242 A244 G245 A246 Q247 H248 N250 R251 E253 R257 R273 Q275
BS02 rna z R154 K204 G211 R213 W319 D329 S331 R149 K199 G206 R208 W314 D324 S326
BS03 rna z E172 R278 K282 E167 R273 K277
Gene Ontology
Molecular Function
GO:0003747 translation release factor activity
GO:0016149 translation release factor activity, codon specific
Biological Process
GO:0006412 translation
GO:0006415 translational termination
GO:0075523 viral translational frameshifting
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5mgp, PDBe:5mgp, PDBj:5mgp
PDBsum5mgp
PubMed27906161
UniProtP07012|RF2_ECOLI Peptide chain release factor RF2 (Gene Name=prfB)

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