Structure of PDB 6zvk Chain y2

Receptor sequence

>6zvky2 (length=114) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

VQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPG
RLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQK
IVVKVLKAQAQSQK

3D structure

PDB

6zvk The Halastavi arva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism.

Chain

Resolution

3.49 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	y2	R4 L5 T6 Y7 R8 R9 R10 L11 S12 Y13 N14 T15 K19 R21 R24 T25 P26 G27 R29 Y34 K37 K40 P42 A45 V48 R54 R60 P61 K62 M65 R66 S68 K69 T70 K72 V74 S75 Y78 G79 G80 S81 A84 K85 V87 R88 R90 I97 E98 K101 I102 V104	R3 L4 T5 Y6 R7 R8 R9 L10 S11 Y12 N13 T14 K18 R20 R23 T24 P25 G26 R28 Y33 K36 K39 P41 A44 V47 R53 R59 P60 K61 M64 R65 S67 K68 T69 K71 V73 S74 Y77 G78 G79 S80 A83 K84 V86 R87 R89 I96 E97 K100 I101 V103

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005783	endoplasmic reticulum
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:6zvk, PDBe:6zvk, PDBj:6zvk
PDBsum	6zvk
PubMed	33296660
UniProt	G1TXG5\|RL34_RABIT Large ribosomal subunit protein eL34 (Gene Name=RPL34)