Structure of PDB 8am9 Chain y

Receptor sequence
>8am9y (length=58) Species: 679895 (Escherichia coli BW25113) [Search protein sequence]
AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAV
SFMVKVEE
3D structure
PDB8am9 Structural basis for translation inhibition by the glycosylated drosocin peptide.
Chainy
Resolution2.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna y S12 I14 G15 K19 A22 T23 L25 G26 G28 R30 R38 E39 A43 I44 G46 M47 S11 I13 G14 K18 A21 T22 L24 G25 G27 R29 R37 E38 A42 I43 G45 M46
BS02 rna y H20 F53 H19 F52
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8am9, PDBe:8am9, PDBj:8am9
PDBsum8am9
PubMed36997646
UniProtP0AG51|RL30_ECOLI Large ribosomal subunit protein uL30 (Gene Name=rpmD)

[Back to BioLiP]