Structure of PDB 6yp7 Chain y

Receptor sequence

>6yp7y (length=219) Species: 3888 (Pisum sativum) [Search protein sequence]

GSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNR
ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDY
LGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD
PLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH
LSDPVNNNAWSYATNFVPG

3D structure

PDB

6yp7 High-Light versus Low-Light: Effects on Paired Photosystem II Supercomplex Structural Rearrangement in Pea Plants.

Chain

Resolution

3.8 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	CHL	y	W222 F228	W210 F216
BS02	CHL	y	V22 Y24 L25 G26 F28 W46	V10 Y12 L13 G14 F16 W34
BS03	CLA	y	G42 D43 Y44 W46 D47 S52 F58 N61 R62 E65 R185 M188	G30 D31 Y32 W34 D35 S40 F46 N49 R50 E53 R173 M176
BS04	CLA	y	L74 G75 G78 F81 F92 Q103 L110 Y112 L113	L62 G63 G66 F69 F80 Q91 L98 Y100 L101
BS05	CHL	y	V119 A121 Q122 S123 I127	V107 A109 Q110 S111 I115
BS06	CHL	y	G101 V119 I127 Q131	G89 V107 I115 Q119
BS07	CHL	y	F98 G101 S102 Q131	F86 G89 S90 Q119
BS08	CHL	y	V138 Y141 R142 G145 L148 F161	V126 Y129 R130 G133 L136 F149
BS09	CHL	y	E63 L64 I67 H68 W71 M135 G136 E139 I143	E51 L52 I55 H56 W59 M123 G124 E127 I131
BS10	CLA	y	R70 M73 L74 Y156 P157 G158 D162 L166 F173 L176 E180	R58 M61 L62 Y144 P145 G146 D150 L154 F161 L164 E168
BS11	CLA	y	W16 K179 K182	W4 K167 K170
BS12	CLA	y	S190 M191 F192 G193 F194 F195 V196 Q197 N208 L209 N220 A221 Y224	S178 M179 F180 G181 F182 F183 V184 Q185 N196 L197 N208 A209 Y212
BS13	CLA	y	H212 L213 P216	H200 L201 P204
BS14	CLA	y	K179 N183 L186	K167 N171 L174

Gene Ontology

	Biological Process
GO:0009765	photosynthesis, light harvesting

	Cellular Component
GO:0016020	membrane

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:6yp7, PDBe:6yp7, PDBj:6yp7
PDBsum	6yp7
PubMed	33207833
UniProt	P27490\|CB28_PEA Chlorophyll a-b binding protein 8, chloroplastic (Gene Name=CAB8)

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