Structure of PDB 8pj5 Chain x

Receptor sequence

>8pj5x (length=421) Species: 9606 (Homo sapiens) [Search protein sequence]

VPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYSQYAYFHEEDE
SSFQLVDTARTWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAF
DRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLM
SCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQDEGNSF
NSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEIASV
AYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNG
VDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYH
VKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKY
LILKDPNKQVIRVYSLPDGTF

3D structure

PDB

8pj5 Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining

Chain

Resolution

2.9 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	x	Q51 D52 K53	Q31 D32 K33
BS02	rna	x	T85 A86	T58 A59

External links

PDB	RCSB:8pj5, PDBe:8pj5, PDBj:8pj5
PDBsum	8pj5
PubMed
UniProt	O15371\|EIF3D_HUMAN Eukaryotic translation initiation factor 3 subunit D (Gene Name=EIF3D)

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