Structure of PDB 8bqd Chain x

Receptor sequence
>8bqdx (length=367) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
YCSGLQCGRETSSQMKCPVCLKQGIVSIFCDTSCYENNYKAHKALHNAKD
GLEGAYDPFPKFKYSGKVKASYPLTPRRYVPEDIPKPDWAANGLPVSEQR
NDRLNNIPIYKKDQIKKIRKACMLGREVLDIAAAHVRPGITTDELDEIVH
NETIKRGAYPSPLNYYNFPKSLCTSVNEVICHGVPDKTVLKEGDIVNLDV
SLYYQGYHADLNETYYVGENISKEALNTTETSRECLKLAIKMCKPGTTFQ
ELGDHIEKHATENKCSVVRTYCGHGVGEFFHCSPNIPHYAKNRTPGVMKP
GMVFTIEPMINEGTWKDMTWPDDWTSTTQDGKLSAQFEHTLLVTEHGVEI
LTARNKKSPGGPRQRIK
3D structure
PDB8bqd The dynamic architecture of Map1- and NatB-ribosome complexes coordinates the sequential modifications of nascent polypeptide chains.
Chainx
Resolution3.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.11.18: methionyl aminopeptidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna x A68 K69 T281 K352 A48 K49 T261 K332
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0004177 aminopeptidase activity
GO:0004239 initiator methionyl aminopeptidase activity
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
GO:0070006 metalloaminopeptidase activity
Biological Process
GO:0006508 proteolysis
GO:0010629 negative regulation of gene expression
GO:0016485 protein processing
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0010494 cytoplasmic stress granule
GO:0022626 cytosolic ribosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8bqd, PDBe:8bqd, PDBj:8bqd
PDBsum8bqd
PubMed37079644
UniProtQ01662|MAP1_YEAST Methionine aminopeptidase 1 (Gene Name=MAP1)

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