Structure of PDB 6em3 Chain x

Receptor sequence
>6em3x (length=267) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
NKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTI
ENTRVYEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNV
TFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTF
YFKLSSFVEHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGR
QVITLHNQRDYIFFRRHRYVFKDNERVGLQELGPQFTLKLKRLQRGIKEE
TEWEHKPEMDKEKKKFY
3D structure
PDB6em3 Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes.
Chainx
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna x H31 T32 V56 H21 T22 V46
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0019843 rRNA binding
GO:0042134 rRNA primary transcript binding
Biological Process
GO:0000055 ribosomal large subunit export from nucleus
GO:0000460 maturation of 5.8S rRNA
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000470 maturation of LSU-rRNA
GO:0006364 rRNA processing
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0030687 preribosome, large subunit precursor

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6em3, PDBe:6em3, PDBj:6em3
PDBsum6em3
PubMed29245012
UniProtP38805|RPF1_YEAST Ribosome production factor 1 (Gene Name=RPF1)

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