Structure of PDB 5apn Chain x

Receptor sequence
>5apnx (length=579) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
ALAISHEDTQILLKDKNILQESVLNKYRTAGQIAQTALKYVTSLINDSYH
SKTTQRQLTVPELCLLTDSFILTRLEQYYKNKVNERGIAIPTTIDIDQIS
GGWCPEIDDTQNLLNWNKGKDSTFASSVTGTLRPGDLVKITLGVHIDGYT
SEVSHTMVIYPVDETKPILQPTGPLLGGKADAVAAAHIAMETVVALLACA
LTPEKLPASLGGTSSGITGQLIRTIVDTIARSYNCGVVPGSRVRRIRRFL
AGQNEGIVAEREYKGVVWTESHQEADLLSNTDAKDLTVVDRGQSTPFTNV
SAIPSDDFVVQSGEVYLIDLKMASLEHCTKKGLVTLETVDSYTGKSHKAG
ELIARPGAYVRDFAQTHILKLKTSRQLLTKIDKQGVYPFKLSHLSSNFPF
VHENEEELQSLKKDLKSFRLGMSEISNNYLCVESPIQIARWVPWDHILKA
TNPNGNLSYDATSTLTLPGHELPLPKLGVSAIKLKSLMNSTKESISLPVA
RECNTIVLCDSSVSTTDRPELLRLTGGSKTCQPSWIHSQHELNPQDSIVQ
GIFQLATLAKDKRFGLLLKETQPMKQKSV
3D structure
PDB5apn Insertion of the Biogenesis Factor Rei1 Probes the Ribosomal Tunnel during 60S Maturation.
Chainx
Resolution3.91 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.-.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna x Q33 Q78 N82 K83 D291 H368 I369 K373 R376 Q377 L379 T380 Q573 K576 Q32 Q77 N81 K82 D290 H367 I368 K372 R375 Q376 L378 T379 Q572 K575
BS02 rna x K346 H348 K493 K345 H347 K492
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0005515 protein binding
GO:0008237 metallopeptidase activity
GO:0046872 metal ion binding
Biological Process
GO:0000055 ribosomal large subunit export from nucleus
GO:0006508 proteolysis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0030687 preribosome, large subunit precursor

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5apn, PDBe:5apn, PDBj:5apn
PDBsum5apn
PubMed26709046
UniProtQ03862|ARX1_YEAST Probable metalloprotease ARX1 (Gene Name=ARX1)

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