Structure of PDB 6wdb Chain w

Receptor sequence
>6wdbw (length=75) Species: 562 (Escherichia coli) [Search protein sequence]
RNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLF
AKADGKVKFEVKGPKNRKFISIEAE
3D structure
PDB6wdb Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading.
Chainw
Resolution4.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 rna w N8 R10 D11 S12 E13 A14 K15 R16 K20 G23 G24 E25 L28 A29 G30 S31 I32 R37 G38 T39 F41 H42 G50 R51 D52 H53 F56 F65 K71 R73 N2 R4 D5 S6 E7 A8 K9 R10 K14 G17 G18 E19 L22 A23 G24 S25 I26 R31 G32 T33 F35 H36 G44 R45 D46 H47 F50 F59 K65 R67
BS02 rna w G69 P70 G63 P64
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6wdb, PDBe:6wdb, PDBj:6wdb
PDBsum6wdb
PubMed32612237
UniProtP0A7L8|RL27_ECOLI Large ribosomal subunit protein bL27 (Gene Name=rpmA)

[Back to BioLiP]