Structure of PDB 3j9x Chain w

Receptor sequence
>3j9xw (length=128) Species: 157899 (Sulfolobus islandicus rod-shaped virus 2) [Search protein sequence]
SRSYSQRYAKWQAKFNAFSNPTVASTILSNVSPVAQQNFQTNVPKFTSVN
ENVSAVLTQYGITGPNRAIYQGFGLKVARALNRIGSGPALVNMINGLKGY
YISAFNANPQVLDAVVNIITGSPTGYVS
3D structure
PDB3j9x A virus that infects a hyperthermophile encapsidates A-form DNA.
Chainw
Resolution3.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna w S7 R8 R13 W17 K20 F24 N44 F45 F52 L81 R85 Y107 S1 R2 R7 W11 K14 F18 N38 F39 F46 L75 R79 Y101
BS02 dna w R8 K16 W17 K20 G70 P71 R73 Q77 R2 K10 W11 K14 G64 P65 R67 Q71
Gene Ontology
Cellular Component
GO:0019029 helical viral capsid
GO:0044423 virion component

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:3j9x, PDBe:3j9x, PDBj:3j9x
PDBsum3j9x
PubMed25999507
UniProtQ8V9P2|CAPSD_SIRV2 Major capsid protein

[Back to BioLiP]