Structure of PDB 8ipd Chain v

Receptor sequence
>8ipdv (length=217) Species: 9606 (Homo sapiens) [Search protein sequence]
PKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNS
KLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVG
LLFTNRTKEEVNEWFTKYTEMDYARAGNKAAFTVSLDPGPLEQFPHSMEP
QLRQLGLPTALKRGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAEFK
VTIKYMWDSQSGRFQQM
3D structure
PDB8ipd Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles.
Chainv
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna v P2 K3 S4 K5 R6 D7 T13 T15 A16 K17 K18 K23 L26 N50 R57 R64 F66 F67 K69 N70 K71 V72 V75 R126 Q152 P184 R188 P1 K2 S3 K4 R5 D6 T12 T14 A15 K16 K17 K22 L25 N49 R56 R63 F65 F66 K68 N69 K70 V71 V74 R125 Q151 P183 R187
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0000956 nuclear-transcribed mRNA catabolic process
GO:0006364 rRNA processing
GO:0042254 ribosome biogenesis
GO:0042273 ribosomal large subunit biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0030687 preribosome, large subunit precursor

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8ipd, PDBe:8ipd, PDBj:8ipd
PDBsum8ipd
PubMed37491604
UniProtQ9UKD2|MRT4_HUMAN mRNA turnover protein 4 homolog (Gene Name=MRTO4)

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