Structure of PDB 8fzj Chain v

Receptor sequence
>8fzjv (length=508) Species: 562 (Escherichia coli) [Search protein sequence]
LSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQASDWMEMEKQRGIS
ITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV
EDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPI
TWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAV
GEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHML
DGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMR
VVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHN
HGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQL
SEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVA
TARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYP
DVQFHQTR
3D structure
PDB8fzj The ribosome termination complex remodels release factor RF3 and ejects GDP.
Chainv
Resolution3.0 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna v K310 H311 R312 Q411 K291 H292 R293 Q392
BS02 rna v H21 R66 H92 R146 H19 R47 H73 R127
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005525 GTP binding
GO:0016149 translation release factor activity, codon specific
GO:0016150 translation release factor activity, codon nonspecific
GO:0097216 guanosine tetraphosphate binding
Biological Process
GO:0006412 translation
GO:0006415 translational termination
GO:0006449 regulation of translational termination
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8fzj, PDBe:8fzj, PDBj:8fzj
PDBsum8fzj
PubMed39030416
UniProtA0A0A0GZD3

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