Structure of PDB 7y7g Chain v

Receptor sequence

>7y7gv (length=84) Species: 562 (Escherichia coli)

AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANV
GCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE

3D structure

• PDB: 7y7g Glycosylation of queuosine in tRNAs contributes to optimal translation and post-embryonic growth in vertebrates (Under submission)
• Chain: v
• Resolution: 2.34 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	v	H3 K4 N12 R14 D15 S16 E17 A18 K19 R20 F26 G27 E29 A33 G34 I36 R41 G42 T43 H46 G54 R55 D56 H57 F60 F69 R77 K78	H2 K3 N11 R13 D14 S15 E16 A17 K18 R19 F25 G26 E28 A32 G33 I35 R40 G41 T42 H45 G53 R54 D55 H56 F59 F68 R76 K77
BS02	rna	v	G73 P74 N76	G72 P73 N75
BS03	rna	v	K5 G7	K4 G6

Gene Ontology

Molecular Function

• GO:0000049 tRNA binding
• GO:0003735 structural constituent of ribosome
• GO:0005515 protein binding
• GO:0019843 rRNA binding
• GO:0043022 ribosome binding

Biological Process

• GO:0000027 ribosomal large subunit assembly
• GO:0001558 regulation of cell growth
• GO:0002181 cytoplasmic translation
• GO:0006412 translation
• GO:0042256 cytosolic ribosome assembly
• GO:0090070 positive regulation of ribosome biogenesis
• GO:1902626 assembly of large subunit precursor of preribosome

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7y7g, PDBe:7y7g, PDBj:7y7g
• PDBsum: 7y7g
• PubMed: 37992713
• UniProt: P0A7L8|RL27_ECOLI Large ribosomal subunit protein bL27 (Gene Name=rpmA)