Structure of PDB 7dco Chain v

Receptor sequence

>7dcov (length=207) Species: 4932 (Saccharomyces cerevisiae)

MNYLEGVGSKKGGGGIASESQFNLQRRKEVESLLSKGENVPYTFQDEQVR
SNPYIYKNHSGKLVCKLCNTMHMSWSSVERHLGGKKHGLNVLRRGISIEK
SSGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGK
KFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAI
SKLYYVQ

3D structure

• PDB: 7dco Mechanism of spliceosome remodeling by the ATPase/helicase Prp2 and its coactivator Spp2.
• Chain: v
• Resolution: 2.5 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	v	G8 K10 K11 G12 F22 Q25	G8 K10 K11 G12 F22 Q25
BS02	rna	v	Y3 K11 R27 K65 M76 S79 R83 N93 R96	Y3 K11 R27 K62 M73 S76 R80 N90 R93
BS03	rna	v	M74 M76 S80 R83 H84 G87 K88 K89	M71 M73 S77 R80 H81 G84 K85 K86
BS04	ZN	v	C68 C71 H84 H90	C65 C68 H81 H87

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sun Dec 1 12:30:14 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7dco', asym_id = 'v', title = 'Mechanism of spliceosome remodeling by the ATPase/helicase Prp2 and its coactivator Spp2.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7dco', asym_id='v', title='Mechanism of spliceosome remodeling by the ATPase/helicase Prp2 and its coactivator Spp2.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003676,0008270', uniprot = '', pdbid = '7dco', asym_id = 'v'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003676,0008270', uniprot='', pdbid='7dco', asym_id='v')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>