Structure of PDB 6lkq Chain v

Receptor sequence
>6lkqv (length=525) Species: 562 (Escherichia coli) [Search protein sequence]
LSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSN
QHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRT
LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPM
ELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQ
EVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEIT
PVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFK
IQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGD
RSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIR
LKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVAR
LKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLA
YIATSMVNLRLAQERYPDVQFHQTR
3D structure
PDB6lkq The structural basis for inhibition of ribosomal translocation by viomycin.
Chainv
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna v K310 H311 H368 K408 K410 K480 K308 H309 H366 K406 K408 K478
BS02 rna v K47 R49 G50 R146 D147 K177 S195 L260 K45 R47 G48 R144 D145 K175 S193 L258
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005525 GTP binding
GO:0016149 translation release factor activity, codon specific
GO:0016150 translation release factor activity, codon nonspecific
GO:0097216 guanosine tetraphosphate binding
Biological Process
GO:0006412 translation
GO:0006415 translational termination
GO:0006449 regulation of translational termination
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6lkq, PDBe:6lkq, PDBj:6lkq
PDBsum6lkq
PubMed32341159
UniProtC3SE77

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