Structure of PDB 5mmj Chain v

Receptor sequence
>5mmjv (length=80) Species: 3562 (Spinacia oleracea) [Search protein sequence]
ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFV
SFSSEEEVEAAIQALNNSVLEGQKIRVNKA
3D structure
PDB5mmj The complete structure of the chloroplast 70S ribosome in complex with translation factor pY.
Chainv
Resolution3.6 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna v Y187 R256 N258 Y7 R76 N78
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0019843 rRNA binding
Biological Process
GO:1901259 chloroplast rRNA processing
Cellular Component
GO:0005840 ribosome
GO:0009507 chloroplast
GO:0009535 chloroplast thylakoid membrane
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5mmj, PDBe:5mmj, PDBj:5mmj
PDBsum5mmj
PubMed28007896
UniProtP82277|RRP2_SPIOL Small ribosomal subunit protein cS22 (Gene Name=PSRP2)

[Back to BioLiP]