Structure of PDB 7pio Chain u

Receptor sequence

>7piou (length=86) Species: 272634 (Mycoplasmoides pneumoniae M129)

SKKGVGSTKNGRDSHAKRLGAKKADGQMIRTGQIIYRQRGTRVYPGVNVG
LGSDDTLFALSDGLVKYQKFGPKQGKTRVSVVKHKL

3D structure

• PDB: 7pio Visualizing translation dynamics at atomic detail inside a bacterial cell.
• Chain: u
• Resolution: 9.5 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	u	S17 K18 T24 N26 G27 R28 D29 S30 H31 A32 K33 R34 L35 A40 D41 G42 Q43 R46 T47 G48 I50 R55 G56 T57 R58 Y60 G68 S69 D70 D71 T72 F74 L76 Y83 K92	S1 K2 T8 N10 G11 R12 D13 S14 H15 A16 K17 R18 L19 A24 D25 G26 Q27 R30 T31 G32 I34 R39 G40 T41 R42 Y44 G52 S53 D54 D55 T56 F58 L60 Y67 K76
BS02	rna	u	F86 G87 P88 K89 Q90	F70 G71 P72 K73 Q74
BS03	rna	u	K18 K19 V21	K2 K3 V5

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7pio, PDBe:7pio, PDBj:7pio
• PDBsum: 7pio
• PubMed: 36171285
• UniProt: P75458|RL27_MYCPN Large ribosomal subunit protein bL27 (Gene Name=rpmA)