Structure of PDB 7pib Chain u

Receptor sequence

>7pibu (length=86) Species: 272634 (Mycoplasmoides pneumoniae M129)

SKKGVGSTKNGRDSHAKRLGAKKADGQMIRTGQIIYRQRGTRVYPGVNVG
LGSDDTLFALSDGLVKYQKFGPKQGKTRVSVVKHKL

3D structure

• PDB: 7pib Visualizing translation dynamics at atomic detail inside a bacterial cell.
• Chain: u
• Resolution: 4.7 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	u	S17 K18 G22 S23 N26 R28 S30 H31 A32 R34 L35 K38 D41 G42 Q49 I50 R53 R55 G56 T57 Y60 D70 D71 T72 F74 Y83 K85 K89	S1 K2 G6 S7 N10 R12 S14 H15 A16 R18 L19 K22 D25 G26 Q33 I34 R37 R39 G40 T41 Y44 D54 D55 T56 F58 Y67 K69 K73
BS02	rna	u	F86 G87 P88 K89	F70 G71 P72 K73
BS03	rna	u	K18 G20 G22	K2 G4 G6

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7pib, PDBe:7pib, PDBj:7pib
• PDBsum: 7pib
• PubMed: 36171285
• UniProt: P75458|RL27_MYCPN Large ribosomal subunit protein bL27 (Gene Name=rpmA)