Structure of PDB 4v4j Chain u

Receptor sequence

>4v4ju (length=99) Species: 262724 (Thermus thermophilus HB27)

RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMR
KAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAGAPLIGGGLSA

3D structure

• PDB: 4v4j Interactions and dynamics of the Shine Dalgarno helix in the 70S ribosome.
• Chain: u
• Resolution: 3.83 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	u	L13 K14 R15 H16 S19 R22 R23 R25 N26 K27 S31 A32 E60 S61 D64 K65 K68 S70 T71 L72 K74 N75 R79 K81 S82 R83 M85 R86 R89 G102 G103 L104 S105	L6 K7 R8 H9 S12 R15 R16 R18 N19 K20 S24 A25 E53 S54 D57 K58 K61 S63 T64 L65 K67 N68 R72 K74 S75 R76 M78 R79 R82 G95 G96 L97 S98

Gene Ontology

Molecular Function

• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding
• GO:0070181 small ribosomal subunit rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0015935 small ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v4j, PDBe:4v4j, PDBj:4v4j
• PDBsum: 4v4j
• PubMed: 17940016
• UniProt: P80380|RS20_THET8 Small ribosomal subunit protein bS20 (Gene Name=rpsT)