Structure of PDB 5y6p Chain t8

Receptor sequence
>5y6pt8 (length=164) Species: 35689 (Griffithsia pacifica) [Search protein sequence]
MKSVITTTISAADAAGRFPSSSDLESIQGNIQRASARLEAAEKLSGNHEA
VVKEAGDACFAKYSYLKNSGEAGDSQEKINKCYRDVDHYMRLINYSLVVG
GTGPLDEWGIAGSREVYRTLNLPGSAYIASFTFTRDRLCVPRDMSSQAGV
EFVAALDYVINSLS
3D structure
PDB5y6p Structure of phycobilisome from the red alga Griffithsia pacifica
Chaint8
Resolution3.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 PEB t8 F60 K78 K81 C82 D85 H88 Y89 Y117 Y127 F60 K78 K81 C82 D85 H88 Y89 Y117 Y127
BS02 PEB t8 K43 R137 L138 R142 D143 M144 K43 R137 L138 R142 D143 M144
BS03 PUB t8 S10 A14 S10 A14
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Sat Nov 16 03:29:50 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5y6p', asym_id = 't8', title = 'Structure of phycobilisome from the red alga Griffithsia pacifica'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5y6p', asym_id='t8', title='Structure of phycobilisome from the red alga Griffithsia pacifica')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0015979,0030089', uniprot = '', pdbid = '5y6p', asym_id = 't8'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0015979,0030089', uniprot='', pdbid='5y6p', asym_id='t8')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>