Structure of PDB 6y7c Chain t

Receptor sequence
>6y7ct (length=667) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
PDKQVSKLQRKNKAKQLRAQRILDSIENRKLFEGKNGAAKIITIVPLVND
LDPLDILYKLLKCADDEGIMVQEVDSKRIFNVHIKKFKSNLKIIIPDMTN
FLNILDCAKVADFVVFGLSGVQEVDEEFGEQIIRALELQGIASYIGVISN
LSAVHEKEKFQLDVKQSLESYFKHFFPSEERVYNLEKNSDALNVLRTLCQ
RLPRSINWRDNRGYVVADFVDFVETSPDSGDLVIEGTVRGIGFNANRLVH
IPDFGDFQLNKIEKITVFESNMNRDTLDEYAPEGTEDWSDYDEDFEYDGL
TTARYDDHGFLPGREQTSKKAAVPKGTSDYQAKWYLDDVISPEEEERQLR
EFRDMEKEDREFPDEIELEPSESAIERLKRYRGLKNLYNCDWQVDEKDPS
SPAEWKRLLRIGNYKNTKNRIIKETKNEAQAIAGDRIRMFIRFPKFLLEK
IQDPKQLLFAVYGLLLHEHKNAVVNFSLQRWEQYDKPVPSQEPIVVQYGV
RRYTIQPLFSQGSNSPNNVHKYERFLHPDTVSVATCIAPVDFTQSPAIFF
KPSPTDAKNIELIGHGTFLNADHSRILAKRAILTGHPFRFHKTVVTVRYM
FFRPEDVEWFKSIPLFTKSGRSGFIKESLGTHGYFKATFDGKLSAQDVVA
MSLYKRMWPMPSLPWNG
3D structure
PDB6y7c Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy.
Chaint
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna t L52 Q53 K55 K57 Q60 L61 R62 R65 K203 F204 R240 Q244 R245 Y399 L749 L8 Q9 K11 K13 Q16 L17 R18 R21 K159 F160 R196 Q200 R201 Y330 L629
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005525 GTP binding
GO:0034511 U3 snoRNA binding
GO:0043021 ribonucleoprotein complex binding
Biological Process
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0030686 90S preribosome
GO:0030688 preribosome, small subunit precursor

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6y7c, PDBe:6y7c, PDBj:6y7c
PDBsum6y7c
PubMed32138239
UniProtQ07381|TSR1_YEAST Ribosome biogenesis protein TSR1 (Gene Name=TSR1)

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