Structure of PDB 8uqp Chain s

Receptor sequence

>8uqps (length=142) Species: 562 (Escherichia coli) [Search protein sequence]

MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDT
GDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERV
IEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI

3D structure

PDB

8uqp Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Chain

Resolution

3.8 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	s	K2 T3 K7 E9 T24 G26 R27 T30 R37 K39 H47 T65 K68 K72 Y75 H76 H77 T78 H80 I81 I84 K85 R95 R99 A104 K106 G107 M108 K111 P113 L114 R116 R120 N131 H132 A134 Q135	K2 T3 K7 E9 T24 G26 R27 T30 R37 K39 H47 T65 K68 K72 Y75 H76 H77 T78 H80 I81 I84 K85 R95 R99 A104 K106 G107 M108 K111 P113 L114 R116 R120 N131 H132 A134 Q135

External links

PDB	RCSB:8uqp, PDBe:8uqp, PDBj:8uqp
PDBsum	8uqp
PubMed	39117885

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