Structure of PDB 8rct Chain r2

Receptor sequence
>8rctr2 (length=116) Species: 562 (Escherichia coli) [Search protein sequence]
DKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAA
STVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHG
RVQALADAAREAGLQF
3D structure
PDB8rct Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM.
Chainr2
Resolution5.32 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna r2 R9 R10 T12 R13 F92 R94 Y99 R8 R9 T11 R12 F91 R93 Y98
BS02 rna r2 R15 R25 H29 R30 T31 R33 H34 Y36 Q38 G44 S45 E46 V47 V54 K56 Y64 N67 K68 Q98 H100 G101 R14 R24 H28 R29 T30 R32 H33 Y35 Q37 G43 S44 E45 V46 V53 K55 Y63 N66 K67 Q97 H99 G100
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8rct, PDBe:8rct, PDBj:8rct
PDBsum8rct
PubMed38409277
UniProtP0C018|RL18_ECOLI Large ribosomal subunit protein uL18 (Gene Name=rplR)

[Back to BioLiP]