Structure of PDB 8y39 Chain r

Receptor sequence
>8y39r (length=64) Species: 1280 (Staphylococcus aureus) [Search protein sequence]
KVCYFTANGITHIDYKDTELLKRFISERGKILPRRVTGTSAKYQRMLTTA
IKRSRHMALLPYVK
3D structure
PDB8y39 Synthetic macrolides overcoming MLS B K-resistant pathogens.
Chainr
Resolution3.6 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna r K43 I44 R47 K55 Q57 R58 T61 K65 R66 R68 H69 Y75 K30 I31 R34 K42 Q44 R45 T48 K52 R53 R55 H56 Y62
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0070181 small ribosomal subunit rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8y39, PDBe:8y39, PDBj:8y39
PDBsum8y39
PubMed38992047
UniProtP66469|RS18_STAAW Small ribosomal subunit protein bS18 (Gene Name=rpsR)

[Back to BioLiP]