Structure of PDB 8upr Chain r

Receptor sequence

>8uprr (length=149) Species: 562 (Escherichia coli) [Search protein sequence]

MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEAR
RAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIA
DAVTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE

3D structure

PDB

8upr Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Chain

Resolution

5.3 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	r	N11 K22 G24 Y25 R27 N28 F29	N11 K22 G24 Y25 R27 N28 F29

External links

PDB	RCSB:8upr, PDBe:8upr, PDBj:8upr
PDBsum	8upr
PubMed	39117885

[Back to BioLiP]