Structure of PDB 7pib Chain r

Receptor sequence

>7pibr (length=139) Species: 272634 (Mycoplasmoides pneumoniae M129)

MIAFAKQFRVRISPQKARLVCQLIVGKKTADAQNILSNTPKKAATLIAKL
LNSAIANATNNHGMNGDALYVFECVANQGPSMKRTIPRAKGSSNMITKRS
SNLVVKLSDNPNERQELIKQQKALVKKRVEGQQKAKMAR

3D structure

• PDB: 7pib Visualizing translation dynamics at atomic detail inside a bacterial cell.
• Chain: r
• Resolution: 4.7 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	r	F8 R11 S13 Q15 K16 R18 Q22 P40 K41 K49 A56 N57 N60 N61 E73 N77 Q78 G79 S81 K83 R84 P87 R88 A89 K90 G91 S92 S93 N94 T97 K98 R99 N102 K127 R128 G131 Q132 A135	F8 R11 S13 Q15 K16 R18 Q22 P40 K41 K49 A56 N57 N60 N61 E73 N77 Q78 G79 S81 K83 R84 P87 R88 A89 K90 G91 S92 S93 N94 T97 K98 R99 N102 K127 R128 G131 Q132 A135

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation
• GO:0046677 response to antibiotic

Cellular Component

• GO:0005840 ribosome
• GO:0015934 large ribosomal subunit
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7pib, PDBe:7pib, PDBj:7pib
• PDBsum: 7pib
• PubMed: 36171285
• UniProt: P75575|RL22_MYCPN Large ribosomal subunit protein uL22 (Gene Name=rplV)