Structure of PDB 8uk2 Chain q

Receptor sequence
>8uk2q (length=259) Species: 444185 (Simian rotavirus A strain RRV) [Search protein sequence]
LPITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLF
LTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELA
DLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIG
CLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRE
NVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQI
IQAMSKRSR
3D structure
PDB8uk2 The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2+
Chainq
Resolution8.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA q D151 E154 E222 L224 D95 E98 E166 L168
BS02 CA q Q177 D228 D231 Q121 D172 D175
BS03 CA q G206 T214 E216 G150 T158 E160
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:8uk2, PDBe:8uk2, PDBj:8uk2
PDBsum8uk2
PubMed38574119
UniProtP12476|VP7_ROTRH Outer capsid glycoprotein VP7

[Back to BioLiP]