Structure of PDB 8bd3 Chain q

Receptor sequence
>8bd3q (length=222) Species: 2649997 (Chlorella ohadii) [Search protein sequence]
EFYGPDRAKWLGPFSEGSVPSYLKGEFPGDYGWDTAGLSADPETFARYRE
IEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFNEDGLN
YLGNPSLIHAQSIVAVLLTQLVIMGAAEAYRYSGEGPVETSGDSLYPGGF
FDPLGLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQGLVTGKSPLENLA
DHLAEPSVNNGFASATKFLPLP
3D structure
PDB8bd3 Structure of Chlorella ohadii Photosystem II Reveals Protective Mechanisms against Environmental Stress.
Chainq
Resolution2.73 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CLA q A75 L77 A36 L38
BS02 CHL q F251 A254 T255 L258 P259 F212 A215 T216 L219 P220
BS03 CHL q W49 W72 T74 W10 W33 T35
BS04 CLA q V153 L157 V114 L118
BS05 CHL q K48 W49 L50 G51 Y70 W72 K9 W10 L11 G12 Y31 W33
BS06 CLA q L62 G68 D69 Y70 W72 D73 L77 S78 F84 Y87 R88 E91 R214 M217 F221 L23 G29 D30 Y31 W33 D34 L38 S39 F45 Y48 R49 E52 R175 M178 F182
BS07 CLA q Y87 I90 H94 Y48 I51 H55
BS08 CLA q L100 G104 T107 F119 L138 Y140 L141 L61 G65 T68 F80 L99 Y101 L102
BS09 CHL q S145 L146 I147 H148 A149 Q150 S151 S106 L107 I108 H109 A110 Q111 S112
BS10 CHL q A128 G129 L138 I147 V155 Q159 I162 M163 A89 G90 L99 I108 V116 Q120 I123 M124
BS11 CHL q F126 K127 G129 A130 F87 K88 G90 A91
BS12 CHL q R96 W97 A166 Y169 R170 G173 E174 P176 V177 S180 S183 L184 P186 F190 R57 W58 A127 Y130 R131 G134 E135 P137 V138 S141 S144 L145 P147 F151
BS13 CHL q I90 I93 H94 W97 Q159 M163 G164 E167 R170 Y171 I51 I54 H55 W58 Q120 M124 G125 E128 R131 Y132
BS14 CLA q R96 M99 L100 Y185 P186 F190 D191 L195 A196 L205 E209 R57 M60 L61 Y146 P147 F151 D152 L156 A157 L166 E170
BS15 CLA q F41 K208 K211 N212 L215 F2 K169 K172 N173 L176
BS16 CLA q L103 K208 N212 L215 L64 K169 N173 L176
BS17 CLA q F218 F221 G222 V225 Q226 T230 N237 H241 N249 G250 F179 F182 G183 V186 Q187 T191 N198 H202 N210 G211
BS18 CLA q H241 P245 F251 H202 P206 F212
BS19 RRX q M99 L103 F190 L215 S219 F223 Q226 P234 M60 L64 F151 L176 S180 F184 Q187 P195
Gene Ontology
Biological Process
GO:0009765 photosynthesis, light harvesting
Cellular Component
GO:0016020 membrane

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8bd3, PDBe:8bd3, PDBj:8bd3
PDBsum8bd3
PubMed37566050
UniProtA0A2P6TDA6

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