Structure of PDB 3jag Chain p

Receptor sequence

>3jagp (length=91) Species: 9986 (Oryctolagus cuniculus)

AKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRA
VGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ

3D structure

• PDB: 3jag Structural basis for stop codon recognition in eukaryotes.
• Chain: p
• Resolution: 3.65 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	p	A2 K3 R4 T5 K6 K7 V8 G9 I10 G12 K13 T16 R17 Y18 G19 A20 S21 L22 R23 H34 F41 C42 K44 K46 R49 R50 A51 V52 G58 M61 K62 W69	A1 K2 R3 T4 K5 K6 V7 G8 I9 G11 K12 T15 R16 Y17 G18 A19 S20 L21 R22 H33 F40 C41 K43 K45 R48 R49 A50 V51 G57 M60 K61 W68
BS02	ZN	p	C39 C42 C60	C38 C41 C59

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0046872 metal ion binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:3jag, PDBe:3jag, PDBj:3jag
• PDBsum: 3jag
• PubMed: 26245381
• UniProt: G1SY53|RL37A_RABIT Large ribosomal subunit protein eL43 (Gene Name=RPL37A)