Structure of PDB 5lyb Chain o2

Receptor sequence

>5lybo2 (length=127) Species: 4932 (Saccharomyces cerevisiae)

ASLPHPKIVKKHTKKFKRHHSDRYHRVAENWRKQKGIDSVVRRRFRGNIS
QPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNIS
AKNRVVILARAKALGIKVTNPKGRLAL

3D structure

• PDB: 5lyb ?
• Chain: o2
• Resolution: 3.25 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	o2	K11 K12 K15 F17 R19 D23 R24 Y25 H26 R27 N31 W32 R33 K34 K36 G37 I38 D39 S40 R43 R44 R45 F46 R47 G48 P53 K54 I55 G56 Y57 G58 S59 N60 K61 K62 K64 F65 S69 N78 K80 E95 A97 H98 N99 I100 S101 A102 K103 N104 R105 K118 N121 R125	K10 K11 K14 F16 R18 D22 R23 Y24 H25 R26 N30 W31 R32 K33 K35 G36 I37 D38 S39 R42 R43 R44 F45 R46 G47 P52 K53 I54 G55 Y56 G57 S58 N59 K60 K61 K63 F64 S68 N77 K79 E94 A96 H97 N98 I99 S100 A101 K102 N103 R104 K117 N120 R124
BS02	MG	o2	R105 R125	R104 R124
BS03	MG	o2	R19 Q35	R18 Q34
BS04	MG	o2	H20 Q35 S40	H19 Q34 S39

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:5lyb, PDBe:5lyb, PDBj:5lyb
• PDBsum: 5lyb
• PubMed: 27827794
• UniProt: P38061|RL32_YEAST Large ribosomal subunit protein eL32 (Gene Name=RPL32)