Structure of PDB 8b5l Chain o

Receptor sequence

>8b5lo (length=103) Species: 9986 (Oryctolagus cuniculus)

VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQ
TKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG
QVI

3D structure

• PDB: 8b5l Structural insights into TRAP association with ribosome-Sec61 complex and translocon inhibition by a CADA derivative.
• Chain: o
• Resolution: 2.86 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	o	V2 N3 P5 R9 T10 F11 K13 K17 H18 Y26 K28 G29 D31 S32 Y34 A35 Q36 G37 R39 R40 R43 K44 G47 Y48 G50 Q51 T52 K53 P54 I55 F56 R57 K58 K59 A60 K61 T63 K65 V67 K80 R81 M82 I85 K86 C88 K89 K97 K98 K100	V1 N2 P4 R8 T9 F10 K12 K16 H17 Y25 K27 G28 D30 S31 Y33 A34 Q35 G36 R38 R39 R42 K43 G46 Y47 G49 Q50 T51 K52 P53 I54 F55 R56 K57 K58 A59 K60 T62 K64 V66 K79 R80 M81 I84 K85 C87 K88 K96 K97 K99
BS02	ZN	o	C12 C15 C72 C77	C11 C14 C71 C76

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome

External links

• PDB: RCSB:8b5l, PDBe:8b5l, PDBj:8b5l
• PDBsum: 8b5l
• PubMed: 36867692
• UniProt: G1T040|RL36A_RABIT Large ribosomal subunit protein eL42 (Gene Name=RPL36A)