Structure of PDB 8uql Chain n

Receptor sequence

>8uqln (length=177) Species: 562 (Escherichia coli) [Search protein sequence]

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFR

3D structure

PDB

8uql Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Chain

Resolution

3.2 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	n	K78 R80	K77 R79
BS02	rna	n	K33 T35 N37 M38 G39 G41 T68 A70 R71 K72 V74 G76 F77 I79 I85 K88 S121 D123 R125 N127 S129 M130 G131 R133 G151 L152 D153 T155 T157	K32 T34 N36 M37 G38 G40 T67 A69 R70 K71 V73 G75 F76 I78 I84 K87 S120 D122 R124 N126 S128 M129 G130 R132 G150 L151 D152 T154 T156
BS03	rna	n	S24 M26 Q27 Q63 K64 L66 T90 R92	S23 M25 Q26 Q62 K63 L65 T89 R91

External links

PDB	RCSB:8uql, PDBe:8uql, PDBj:8uql
PDBsum	8uql
PubMed	39117885

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