Structure of PDB 6j6n Chain n

Receptor sequence
>6j6nn (length=299) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
FTKSELKRRRKTRKGDGPWGSWSPKKVIRNYPGHPEGTTALKFLPKTGHL
ILSGGNDHTIKIWDFECLRDFQGHNKPIKALRFTEDCQSFLSSSFDRSVK
IWDTETGKVKTRLHLNSTPADVESRPTNPHEFIVGLSNSKILHYDDVQTY
DHHLSSILALKYFPDGSKFISSSEDKTVRIWENQINVPIKQISDTASMPF
LNVHPNYFCAQSMDNRIYSFSKYKRHPKKIHSSAGYGISLAFSGDGRYIC
SGDSKSRLFTWDWNTSRLLIPGNKPITQVDWHPSKVICSGAAGKIYVCD
3D structure
PDB6j6n Structures of the Catalytically Activated Yeast Spliceosome Reveal the Mechanism of Branching.
Chainn
Resolution3.86 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna n T52 K53 S54 R60 T2 K3 S4 R10
Gene Ontology
Molecular Function
GO:0000386 second spliceosomal transesterification activity
GO:0003729 mRNA binding
GO:0005515 protein binding
Biological Process
GO:0000348 mRNA branch site recognition
GO:0000350 generation of catalytic spliceosome for second transesterification step
GO:0000389 mRNA 3'-splice site recognition
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0034399 nuclear periphery
GO:0071013 catalytic step 2 spliceosome

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Cellular Component
External links
PDB RCSB:6j6n, PDBe:6j6n, PDBj:6j6n
PDBsum6j6n
PubMed30879786
UniProtP40968|PRP17_YEAST Pre-mRNA-processing factor 17 (Gene Name=CDC40)

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