Structure of PDB 5xnl Chain n

Receptor sequence

>5xnln (length=219) Species: 3888 (Pisum sativum) [Search protein sequence]

GSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNR
ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDY
LGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD
PLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH
LSDPVNNNAWSYATNFVPG

3D structure

PDB

5xnl Structure and assembly mechanism of plant C2S2M2-type PSII-LHCII supercomplex

Chain

Resolution

2.7 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	CLA	n	A49 L51 F192	A37 L39 F180
BS02	CHL	n	W222 A225 F228 V229	W210 A213 F216 V217
BS03	CHL	n	W46 T48	W34 T36
BS04	CHL	n	V22 K23 Y24 L25 G26 F28 W46	V10 K11 Y12 L13 G14 F16 W34
BS05	CLA	n	G42 D43 Y44 W46 D47 L51 S52 F58 N61 R62 E65 R185 M188 F189 F192	G30 D31 Y32 W34 D35 L39 S40 F46 N49 R50 E53 R173 M176 F177 F180
BS06	CLA	n	L64 H68 F195	L52 H56 F183
BS07	CLA	n	L74 L77 G78 F81 P82 F92 Q103 Y112 L113	L62 L65 G66 F69 P70 F80 Q91 Y100 L101
BS08	CHL	n	S117 V119 H120 A121 Q122 S123 A126	S105 V107 H108 A109 Q110 S111 A114
BS09	CHL	n	W71 G101 L110 I127 Q131	W59 G89 L98 I115 Q119
BS10	CHL	n	F98 K99 G101 S102 Q131	F86 K87 G89 S90 Q119
BS11	CHL	n	R70 W71 V138 Y141 R142 G146 P147 L148 G149 E150 P157 S160 F161 P163	R58 W59 V126 Y129 R130 G134 P135 L136 G137 E138 P145 S148 F149 P151
BS12	CHL	n	L64 I67 H68 W71 Q131 G136 E139 R142 I143	L52 I55 H56 W59 Q119 G124 E127 R130 I131
BS13	CLA	n	R70 M73 L74 Y156 P157 G158 F161 L166 F173 L176 K177 K179 E180 N183	R58 M61 L62 Y144 P145 G146 F149 L154 F161 L164 K165 K167 E168 N171
BS14	CLA	n	W16 K179 K182 N183	W4 K167 K170 N171
BS15	CLA	n	L77 L176 K179 N183 L186	L65 L164 K167 N171 L174
BS16	CLA	n	F189 F192 G193 V196 Q197 V200 T201 N208 L209 H212 N220 A221 Y224	F177 F180 G181 V184 Q185 V188 T189 N196 L197 H200 N208 A209 Y212
BS17	CLA	n	H212 L213 P216 N220 W222	H200 L201 P204 N208 W210

Gene Ontology

	Biological Process
GO:0009765	photosynthesis, light harvesting

	Cellular Component
GO:0016020	membrane

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:5xnl, PDBe:5xnl, PDBj:5xnl
PDBsum	5xnl
PubMed	28839073
UniProt	P27490\|CB28_PEA Chlorophyll a-b binding protein 8, chloroplastic (Gene Name=CAB8)

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