Structure of PDB 5nwy Chain n

Receptor sequence
>5nwyn (length=56) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRG
RKVIAK
3D structure
PDB5nwy The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling.
Chainn
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna n A2 V3 Q4 Q5 N6 K7 T9 R10 S11 K12 R13 G14 M15 R16 R17 S18 H19 S27 S29 V30 R40 H41 Y49 R50 K57 A1 V2 Q3 Q4 N5 K6 T8 R9 S10 K11 R12 G13 M14 R15 R16 S17 H18 S26 S28 V29 R39 H40 Y48 R49 K56
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0000302 response to reactive oxygen species
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0009314 response to radiation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:5nwy, PDBe:5nwy, PDBj:5nwy
PDBsum5nwy
PubMed28556777
UniProtP0A7N4|RL32_ECOLI Large ribosomal subunit protein bL32 (Gene Name=rpmF)

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