Structure of PDB 6hcm Chain m3

Receptor sequence

>6hcmm3 (length=52) Species: 9986 (Oryctolagus cuniculus)

IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKK
VK

3D structure

• PDB: 6hcm ZNF598 Is a Quality Control Sensor of Collided Ribosomes.
• Chain: m3
• Resolution: 6.8 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	m3	R71 Y74 R76 H78 R80 V82 N83 R85 K86 K88 R96 K98	R21 Y24 R26 H28 R30 V32 N33 R35 K36 K38 R46 K48
BS02	ZN	m3	C70 C84	C20 C34

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 30 02:38:11 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6hcm', asym_id = 'm3', title = 'ZNF598 Is a Quality Control Sensor of Collided Ribosomes.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6hcm', asym_id='m3', title='ZNF598 Is a Quality Control Sensor of Collided Ribosomes.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6hcm', asym_id = 'm3'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6hcm', asym_id='m3')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>