Structure of PDB 7pic Chain m

Receptor sequence

>7picm (length=119) Species: 272634 (Mycoplasmoides pneumoniae M129)

SYINKPGKTSAWRVMTVRQQVSAVLAYGKIETTLKKAKNTQKRLDKLITL
AKVDNFNNRRQVKKWLLNTNLFDVDQLMDHLFSKVAPKYEKTPGGYSRVL
KLGPRRGDATEMAILQLTD

3D structure

• PDB: 7pic Visualizing translation dynamics at atomic detail inside a bacterial cell.
• Chain: m
• Resolution: 9.1 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	m	S2 Y3 I4 K6 P7 S11 W13 R14 V15 M16 Q20 Q21 Y28 I31 E32 K36 N40 Q42 K43 D46 K47 T50 N58 R60 R61 K64 K65 N69 T70 N71 P94 G95 G96 R99 K102 R106 R107 G108 D109 A110 T111	S1 Y2 I3 K5 P6 S10 W12 R13 V14 M15 Q19 Q20 Y27 I30 E31 K35 N39 Q41 K42 D45 K46 T49 N57 R59 R60 K63 K64 N68 T69 N70 P93 G94 G95 R98 K101 R105 R106 G107 D108 A109 T110

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7pic, PDBe:7pic, PDBj:7pic
• PDBsum: 7pic
• PubMed: 36171285
• UniProt: Q59547|RL17_MYCPN Large ribosomal subunit protein bL17 (Gene Name=rplQ)