Structure of PDB 6wdb Chain m

Receptor sequence

>6wdbm (length=136) Species: 562 (Escherichia coli)

MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAAR
RAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGK
VLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM

3D structure

• PDB: 6wdb Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading.
• Chain: m
• Resolution: 4.0 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	m	K5 R6 T7 K8 F9 R10 K11 M12 H13 K14 G15 R16 N17 Q22 R40 R44 E47 A48 R51 R55 R66 F68 T74 E75 K76 R81 M82 G83 K84 G85 K86 G87 K118 L119 A122 K123 P125 K127	K5 R6 T7 K8 F9 R10 K11 M12 H13 K14 G15 R16 N17 Q22 R40 R44 E47 A48 R51 R55 R66 F68 T74 E75 K76 R81 M82 G83 K84 G85 K86 G87 K118 L119 A122 K123 P125 K127
BS02	rna	m	R16 R18 R38	R16 R18 R38
BS03	rna	m	K58 R59	K58 R59

Gene Ontology

Molecular Function

• GO:0000049 tRNA binding
• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0000027 ribosomal large subunit assembly
• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6wdb, PDBe:6wdb, PDBj:6wdb
• PDBsum: 6wdb
• PubMed: 32612237
• UniProt: P0ADY7|RL16_ECOLI Large ribosomal subunit protein uL16 (Gene Name=rplP)