Structure of PDB 6swa Chain m

Receptor sequence

>6swam (length=105) Species: 10090 (Mus musculus)

VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQ
TKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG
QVIQF

3D structure

• PDB: 6swa Protein Synthesis in the Developing Neocortex at Near-Atomic Resolution Reveals Ebp1-Mediated Neuronal Proteostasis at the 60S Tunnel Exit.
• Chain: m
• Resolution: 3.1 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	m	V2 N3 P5 R8 R9 T10 K13 H18 Y26 G29 D31 Y34 A35 Q36 G37 R39 R43 K44 G47 Y48 G50 Q51 T52 P54 I55 F56 K58 A60 K61 K64 K65 V67 K80 R81 A84 K86 R87 C88 K89 K97 K98 K100	V1 N2 P4 R7 R8 T9 K12 H17 Y25 G28 D30 Y33 A34 Q35 G36 R38 R42 K43 G46 Y47 G49 Q50 T51 P53 I54 F55 K57 A59 K60 K63 K64 V66 K79 R80 A83 K85 R86 C87 K88 K96 K97 K99
BS02	ZN	m	C12 C72	C11 C71

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6swa, PDBe:6swa, PDBj:6swa
• PDBsum: 6swa
• PubMed: 33357414
• UniProt: Q5M9P1