Structure of PDB 9ax7 Chain l

Receptor sequence

>9ax7l (length=136) Species: 562 (Escherichia coli)

MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAAR
RAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGK
VLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM

3D structure

• PDB: 9ax7 Structural analysis of noncanonical translation initiation complexes.
• Chain: l
• Resolution: 2.63 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	l	K5 R6 K8 F9 R10 K11 M12 H13 K14 G15 R16 Q22 G23 F28 R44 Q45 A48 R55 K62 W64 R66 F68 D70 K76 L78 A79 X81 X82 G83 K84 G85 K86 K100 A122 K123 P125	K5 R6 K8 F9 R10 K11 M12 H13 K14 G15 R16 Q22 G23 F28 R44 Q45 A48 R55 K62 W64 R66 F68 D70 K76 L78 A79 X81 X82 G83 K84 G85 K86 K100 A122 K123 P125
BS02	rna	l	R18 G19 R38	R18 G19 R38

External links

• PDB: RCSB:9ax7, PDBe:9ax7, PDBj:9ax7
• PDBsum: 9ax7
• PubMed: 39222680
• UniProt: A1AGK1|RL16_ECOK1 Large ribosomal subunit protein uL16 (Gene Name=rplP)