Structure of PDB 8uu5 Chain l

Receptor sequence

>8uu5l (length=134) Species: 1642 (Listeria innocua)

PTINQLVRKPRQSKIKKSTSPALNKGLNSFKRELTDVNSPQKRGVCTRVG
TMTPKKPNSALRKYARVRLSNGIEVTAYIPGIGHNLQEHSVVLIRGGRVK
DLPGVRYHIVRGALDTAGVENRGQSRSKYGTKKP

3D structure

• PDB: 8uu5 Mechanistic insights into the alternative ribosome recycling by HflXr.
• Chain: l
• Resolution: 3.0 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	l	P2 N5 Q6 R9 R12 Q13 N29 N39 S40 P41 Q42 R44 N59 S60 A61 L62 R63 S71 R96 G97 K101 D102 A114 R123 G124 Q125 S126 R127 S128 T132 K133 K134	P1 N4 Q5 R8 R11 Q12 N28 N38 S39 P40 Q41 R43 N58 S59 A60 L61 R62 S70 R95 G96 K100 D101 A113 R122 G123 Q124 S125 R126 S127 T131 K132 K133

Gene Ontology

Molecular Function

• GO:0000049 tRNA binding
• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0015935 small ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:8uu5, PDBe:8uu5, PDBj:8uu5
• PDBsum: 8uu5
• PubMed: 38407413
• UniProt: A0A660JM56