Structure of PDB 8ur0 Chain l

Receptor sequence

>8ur0l (length=201) Species: 562 (Escherichia coli) [Search protein sequence]

MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRA
EVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKM
YRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIIT
GELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEML
A

3D structure

PDB

8ur0 Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Chain

Resolution

3.4 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	l	N24 H29 Q30 Y35 A36 A39 R40 Q41 T43 R44 A45 Q46 K47 R49 A50 T53 S55 K58 Q62 K63 G64 G66 R67 A68 R69 G71 S75 P76 I77 W78 R79 S80 V83 T84 F85 P89 Q90 K95 N97 K98 K99 M100 Y101 R102 K130 T131 L159 R162 N163 L164 H165 M199	N24 H29 Q30 Y35 A36 A39 R40 Q41 T43 R44 A45 Q46 K47 R49 A50 T53 S55 K58 Q62 K63 G64 G66 R67 A68 R69 G71 S75 P76 I77 W78 R79 S80 V83 T84 F85 P89 Q90 K95 N97 K98 K99 M100 Y101 R102 K130 T131 L159 R162 N163 L164 H165 M199

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Cellular Component

External links

PDB	RCSB:8ur0, PDBe:8ur0, PDBj:8ur0
PDBsum	8ur0
PubMed	39117885
UniProt	A1AGK6\|RL4_ECOK1 Large ribosomal subunit protein uL4 (Gene Name=rplD)

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