Structure of PDB 8uk3 Chain l

Receptor sequence
>8uk3l (length=265) Species: 444185 (Simian rotavirus A strain RRV) [Search protein sequence]
QNYGINLPITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKD
TLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQL
DMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNT
QTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCK
KLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVV
DYVNQIIQAMSKRSR
3D structure
PDB8uk3 The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2+
Chainl
Resolution8.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA l Q177 D228 D231 Q127 D178 D181
BS02 CA l G206 T214 E216 G156 T164 E166
BS03 CA l D151 E154 E222 L224 D101 E104 E172 L174
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:8uk3, PDBe:8uk3, PDBj:8uk3
PDBsum8uk3
PubMed38574119
UniProtP12476|VP7_ROTRH Outer capsid glycoprotein VP7

[Back to BioLiP]