Structure of PDB 8olb Chain l

Receptor sequence

>8olbl (length=276) Species: 10912 (Rotavirus) [Search protein sequence]

QNYGINLPITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKD
TLSQLFLTKGWPTGSVYFKEYTNIASFSVDPQLYCDYNVVLMKYDATLQL
DMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNT
QTLGIGCLTTDATTFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCK
KLGPRENVAVIQVGGSDILDITADPTTAPQTERMMRINWKKWWQVFYTVV
DYVDQIIQVMSKRSRSLNSAAFYYRV

3D structure

PDB

8olb Structural basis of rotavirus spike proteolytic activation

Chain

Resolution

3.4 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	CA	l	Q177 D228 V229 D231	Q127 D178 V179 D181
BS02	CA	l	G206 E216	G156 E166

External links

PDB	RCSB:8olb, PDBe:8olb, PDBj:8olb
PDBsum	8olb
PubMed
UniProt	A0A060IEQ1

[Back to BioLiP]