Structure of PDB 3j7q Chain l

Receptor sequence

>3j7ql (length=50) Species: 9823 (Sus scrofa) [Search protein sequence]

SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL

3D structure

PDB

3j7q Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.

Chain

Resolution

3.4 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	l	S2 S3 H4 K5 F7 K10 L13 Q17 P22 R28 I35 R36 Y37 N38 K40 R41 R42 H43 W44 R45 K48	S1 S2 H3 K4 F6 K9 L12 Q16 P21 R27 I34 R35 Y36 N37 K39 R40 R41 H42 W43 R44 K47
BS02	rna	l	T6 R11 K15 K18 Q19 R21 P24 W26 M29 T31 K40	T5 R10 K14 K17 Q18 R20 P23 W25 M28 T30 K39

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation
GO:0002227	innate immune response in mucosa
GO:0006412	translation
GO:0019731	antibacterial humoral response
GO:0050830	defense response to Gram-positive bacterium
GO:0061844	antimicrobial humoral immune response mediated by antimicrobial peptide

	Cellular Component
GO:0005615	extracellular space
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:0022626	cytosolic ribosome
GO:1990904	ribonucleoprotein complex

External links