Structure of PDB 8ip9 Chain ka

Receptor sequence
>8ip9ka (length=193) Species: 4565 (Triticum aestivum) [Search protein sequence]
PGGDVKLFNRWTFEDVQVSDISLNDYLAVTSMKHYTFLPHSAGRYSAKRF
RKAQCPIIERLTNSLMMHGRNNGKKIMAVRIIKHTMEIIHLLTDANPIQI
IVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARES
AFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
3D structure
PDB8ip9 Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1.
Chainka
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna ka H47 S53 R56 K59 N70 L72 H75 G76 R77 N78 N79 G80 K81 K82 M84 R141 N144 R155 F159 R160 N161 V162 T164 I165 H40 S46 R49 K52 N63 L65 H68 G69 R70 N71 N72 G73 K74 K75 M77 R134 N137 R148 F152 R153 N154 V155 T157 I158
BS02 MG ka A158 N161 A151 N154
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8ip9, PDBe:8ip9, PDBj:8ip9
PDBsum8ip9
PubMed38267667
UniProtW5D067

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