Structure of PDB 9b8o Chain k

Receptor sequence
>9b8ok (length=150) Species: 10116 (Rattus norvegicus) [Search protein sequence]
NNPEYSSFFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKS
IIPVVMAGIIAIYGLVVAVLIANSLTDGITLYRSFLQLGAGLSVGLSGLA
AGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
3D structure
PDB9b8o High-resolution electron cryomicroscopy of V-ATPase in native synaptic vesicles.
Chaink
Resolution3.2 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CLR k V71 V74 L75 N78 V66 V69 L70 N73
BS02 CLR k I64 Y68 V71 L150 I59 Y63 V66 L145
BS03 CLR k I147 L150 I151 I142 L145 I146
Gene Ontology
Molecular Function
GO:0031625 ubiquitin protein ligase binding
Biological Process
GO:0030177 positive regulation of Wnt signaling pathway
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0097401 synaptic vesicle lumen acidification
GO:1902600 proton transmembrane transport
GO:1904093 negative regulation of autophagic cell death
Cellular Component
GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain
GO:0008021 synaptic vesicle
GO:0016020 membrane
GO:0030665 clathrin-coated vesicle membrane
GO:0030672 synaptic vesicle membrane
GO:0031410 cytoplasmic vesicle
GO:0033176 proton-transporting V-type ATPase complex
GO:0045202 synapse

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:9b8o, PDBe:9b8o, PDBj:9b8o
PDBsum9b8o
PubMed38900912
UniProtP63081|VATL_RAT V-type proton ATPase 16 kDa proteolipid subunit c (Gene Name=Atp6v0c)

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