Structure of PDB 8wmj Chain k
Receptor sequence
>8wmjk (length=180) Species:
52970
(Rhodomonas salina) [
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RAVPFAPAPDCLPENIPGYMGFDPLGLSTLCNVEWLREAEIKHCRVAMLA
AAGSIAQDLYQFPGVEKIVGSAKMTGVHDKILAAASTGDYKAQAMSQILF
WTSFLEIVTLPAVFETMNGGPRKPGVFFFDPLGLGKGDKMGEMELKEIKN
GRLAMIGVGGMVHHYLLTGKGPIQFLSGIP
3D structure
PDB
8wmj
Growth phase-dependent reorganization of cryptophyte photosystem I antennae.
Chain
k
Resolution
3.0 Å
3D
structure
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Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
CLA
k
A48 V49 P50 F51 M66 F68
A2 V3 P4 F5 M20 F22
BS02
CLA
k
L58 I62 G64 M66 F68 D69 L73 R83 E86 H89 R198 M201
L12 I16 G18 M20 F22 D23 L27 R37 E40 H43 R152 M155
BS03
CLA
k
W81 L82 H89
W35 L36 H43
BS04
CLA
k
L95 A96 G99 A102 Q103 Y106 Q107 F108 V123 M141
L49 A50 G53 A56 Q57 Y60 Q61 F62 V77 M95
BS05
CLA
k
F108 P109 G110 V111 K113 K137
F62 P63 G64 V65 K67 K91
BS06
CLA
k
Y136 Q143 W147
Y90 Q97 W101
BS07
CLA
k
H124 L128 M141 S142 I144 L145
H78 L82 M95 S96 I98 L99
BS08
CLA
k
W81 A85 K88 H89 S149 E152 L156
W35 A39 K42 H43 S103 E106 L110
BS09
CLA
k
R91 M94 L95 F173 F174 F175 D176 L180 G181 M186 M189 E190 E193
R45 M48 L49 F127 F128 F129 D130 L134 G135 M140 M143 E144 E147
BS10
CLA
k
K192 K195
K146 K149
BS11
KC2
k
K192 N196
K146 N150
BS12
KC2
k
I202 G206 H209 H210 F221 I225 P226
I156 G160 H163 H164 F175 I179 P180
BS13
KC2
k
I225 P226
I179 P180
BS14
CLA
k
H209 L212 L213
H163 L166 L167
BS15
II0
k
M94 F175 D176 L178 L199 M207 H210 P218 F221 L222
M48 F129 D130 L132 L153 M161 H164 P172 F175 L176
BS16
II0
k
F68 D69 P70 L71 H89 V92 A93 A96 Q103 M120 M201
F22 D23 P24 L25 H43 V46 A47 A50 Q57 M74 M155
BS17
II0
k
M66 K195 R198 L199 I202 L213
M20 K149 R152 L153 I156 L167
BS18
IHT
k
F68 T121 H124 D125 G205 V208
F22 T75 H78 D79 G159 V162
BS19
II0
k
R91 V92 L95 I144 T148
R45 V46 L49 I98 T102
BS20
CLA
k
F173 F175
F127 F129
BS21
II0
k
Y136 Q139 Q143 F146 W147
Y90 Q93 Q97 F100 W101
BS22
IHT
k
W147 F150
W101 F104
External links
PDB
RCSB:8wmj
,
PDBe:8wmj
,
PDBj:8wmj
PDBsum
8wmj
PubMed
38734819
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